rs242835259 SNP Detail

Summary

• ID
  rs242835259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:93439043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAATGTT ATCAAACACA
  GTAGGGAAAG TTCTCACTTT GTATTATAAA AAGGACAGCC ATATATCAAC TGTTACAGAA
  ATGAAGTAAG ACAGAATATC TCAAACTGTA TAAACCATTT TCTTTTTTCC TTTGTTTTTT
  TTAACATTTT ATTTATTTTA TTTCATTCAT TCGTTTGTTT GTTTGTTTGT TTATTTATTT
  R
  TTTATTTATT TTGACAGGAT AGGCCTGGCT GTCCTGGAAC TCACCTTGTA GACTAGGCTG
  GCCTCGAACT CAGAAATCTC CTGTCTCTGC TTCCCAAGTG CTGGAATTAA AAGTGTGTGC
  CACCACATCC CAGCTTTAAA CCATTTTCTT TCTTTTTTTC TTCCTTCCTT CCTTCCTTCC
  TTCCTTCCTT CCTTCCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J
ss392032752	MGP_WTSI_14_93600826	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J
rs242835259					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392032752	MGP_WTSI_14_93600826	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:93439043 () rs orientation: forward

Symbol	Name	Function Class
Gm17922	predicted gene, 17922	493 bp downstream
Pcdh9	protocadherin 9	within coordinates
Tssr129946	transcription start site region 129946	499 bp downstream
Tssr129947	transcription start site region 129947	526 bp downstream
Tssr129948	transcription start site region 129948	618 bp downstream