rs242840312 SNP Detail

Summary

• ID
  rs242840312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97747079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAGCTCCC TGCAATCTCA CTTCCCTCTG
  TTTGTCCACA AGCGTCTTCA GTCACACATC CTGACCAGGA AAGGTACCAT CAAAGTCTGC
  TGTTTAGGAC CATGACAGGA CACAAGAGAG TGGAAGAGTG ACCACGCCTT CATACATGAG
  Y
  ACAGATACAA TTGGATGTCA CCTCAGACTT TAGGGTAAAC TATAACCCTA CAGCAGCCTC
  CCCACTTATG TTTCCACAAC AGTAGATCTC CAAGCCTCAC AGCCTCCCTC TACCATGTGG
  ATGCAACACT TCCTTCTACC ACAGTCAAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323123539	CHEV_9_97765445	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242840312					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97747079 () rs orientation: forward

Symbol	Name	Function Class
Clstn2	calsyntenin 2	within coordinates
Rr198247	regulatory region 198247	1079 bp distal
Rr205510	regulatory region 205510	1119 bp distal