rs242843466 SNP Detail

Summary

• ID
  rs242843466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84708796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCATACTC ACAGAGGTCT GCCTGACTCT GCTCCCACGT
  GCTAGGTTTA AAGGCACATG CTACCACTGC CCGAAGTTCT TTAAAAATTT TTTAAAACCT
  K
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  GTTGGCCAAC AAGCATAACC AGTTCCAGGT TCAGTGAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322746886	CHEV_8_86506066	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242843466					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84708796 () rs orientation: forward

Symbol	Name	Function Class
Prkaca	protein kinase, cAMP dependent, catalytic, alpha	Intron
Rr666367	regulatory region 666367	1245 bp proximal
Rr666368	regulatory region 666368	1405 bp proximal
Tssr78321	transcription start site region 78321	1615 bp downstream
Tssr78322	transcription start site region 78322	628 bp upstream