rs242856543 SNP Detail

Summary

• ID
  rs242856543
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54814530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC AAAGGTTCAT CTCCAGGCCC
  A
  CCATTCGCTC CACGGTGTCC TGACT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324638263	CHEV_14_55195910	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242856543					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54814530 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	522 bp upstream
Rr389677	regulatory region 389677	within coordinates
Rr404101	regulatory region 404101	1082 bp upstream
Tssr128601	transcription start site region 128601	1365 bp upstream
Tssr128602	transcription start site region 128602	407 bp downstream
Tssr128603	transcription start site region 128603	454 bp downstream
Tssr128604	transcription start site region 128604	470 bp downstream
Tssr128605	transcription start site region 128605	488 bp downstream
Tssr128606	transcription start site region 128606	505 bp downstream