rs242857789 SNP Detail

Summary

• ID
  rs242857789
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38059455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACTCAG GGCCTTAGAG
  CAGTCAGTGC TCCTAACTGC TGAGCCATCT CTCCAGCCCA TGTCTGGCTT TTTATGTGAT
  CACTGGGGGT ATGATCTGAA TTCCTCGTGT TTGCATGGCA AACACTCTAC TCGTTAAACC
  ATTTCTCTGA ACTATTTACT TATACAATAG AAATTTAATA AAGTTTTATT ATGAATACTT
  S
  TTTTGCTGTT AATAAAGACT CAGTGGCCAA AGAGATTTCC TTCTCAAAAT TCATGTCAGA
  TGTTAACTAA AATTTTCCCT TTCTATAAAA AAAAAAAAAC AAAAAAACAG CTTAACCTTT
  GAAATATAAA AGGAAAAGTA AATTAAGAGA CTTAAATTAG TTACACTTAG ATGACAGGGA
  GCATGTTTTT GTTTCATTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349287108	MGP_WTSI_1_38077219	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	G	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242857789					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	G	G	C	C	C	C	C	C	G	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349287108	MGP_WTSI_1_38077219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38059455 () rs orientation: forward

Symbol	Name	Function Class
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	55 bp distal
Tssr6339	transcription start site region 6339	1351 bp downstream
Tssr6340	transcription start site region 6340	1325 bp downstream
Tssr6341	transcription start site region 6341	1293 bp downstream
Tssr6342	transcription start site region 6342	1265 bp downstream
Tssr6343	transcription start site region 6343	1247 bp downstream
Tssr6344	transcription start site region 6344	1211 bp downstream
Tssr6345	transcription start site region 6345	1182 bp downstream
Tssr6346	transcription start site region 6346	1131 bp downstream
Tssr6347	transcription start site region 6347	1094 bp downstream
Tssr6348	transcription start site region 6348	954 bp downstream
Tssr6349	transcription start site region 6349	892 bp downstream
Tssr6350	transcription start site region 6350	1293 bp upstream
Tssr6351	transcription start site region 6351	1330 bp upstream
Tssr6352	transcription start site region 6352	1356 bp upstream
Tssr6353	transcription start site region 6353	1379 bp upstream
Tssr6354	transcription start site region 6354	1860 bp upstream
Tssr6355	transcription start site region 6355	1899 bp upstream
Tssr11327	transcription start site region 11327	1813 bp downstream