rs242866834 SNP Detail

Summary

• ID
  rs242866834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90289385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGAGCA ACAGTACTGA
  AAGCCACACA TCATTAACTA CATCATGGGA AAGATCAGAA GAGGCCAAGC ATCGAGCTCT
  AATGCCTCCT GCCCCTCGCT ATCAAGCTCA GGCAGATCCA CTCCCGTCCC TGGCCTCCAA
  TAAATTCTCC AAAGCAGTGT TAGGTCAAAA CCCTGTGATG CTCATGAAGT TGGCTCTTCA
  Y
  GCCCTCAGAT CTATGCTCAG TCACCTTTAT ATGTATCCTT TCCGTGGTGC ATCTTCACAT
  CACGCCCTAG ACAAGAATAC CATTTCTCCC TTCCTTGGCT CTTTCTTTCT CTCTTCCGTC
  CTCTTAGCCA TAATCACCAC CTATCTACTT GCCTACTTTT ATCTCTTATC CGTTTTGTTC
  AGCAGGCTAA AAGTTCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320390730	CHEV_2_90299198	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242866834					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90289385 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	within coordinates
Tssr18753	transcription start site region 18753	593 bp upstream
Tssr25085	transcription start site region 25085	1845 bp upstream
Tssr25086	transcription start site region 25086	1450 bp upstream
Tssr25087	transcription start site region 25087	852 bp upstream
Tssr25088	transcription start site region 25088	714 bp upstream
Tssr25089	transcription start site region 25089	1654 bp downstream
Tssr25090	transcription start site region 25090	1694 bp downstream
Tssr25091	transcription start site region 25091	1852 bp downstream