rs242867871 SNP Detail

Summary

• ID
  rs242867871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80077723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATATTGTG GAATGGTGGG
  CAGAGATGGC CAGTAGGGAC CTAGGCAGTG ACTCTGTACA GGTGGAGGGG TGGGGAACAT
  AAGCCTTAGG TAGGGTCAGT CGGCCATGGG GAGAGGCAGG GCTTACCCTT TGATAAGCCT
  TACCCCCTTA CTTGTAAGTA GCAGTGAGTG GCTGCCGGCA GGATGCATAC AGCATGAAGA
  R
  CTCTGAGTAG ACTTCTGTGG GTATCTCTGG GTGGACTCAG GATAGGCCCC CATACCTCCC
  ACAGTTGCGG GTCACTGAGA ACTAGGGAAC AGATTTGAGC CAGGCAGGCA AACAGGTAAC
  AGCTGAGTAG CCAGAGCACT AACCTTGGAG CCCTCCGCCC CTGGCCTGAG TTCCCAGTGG
  TCAGGGCTGG GGTAAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394694071	MGP_WTSI_15_80023952	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242867871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394694071	MGP_WTSI_15_80023952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80077723 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505908	regulatory region 505908	1377 bp distal
Rr505909	regulatory region 505909	510 bp distal
Rr505910	regulatory region 505910	within coordinates
Tssr4660	transcription start site region 4660	390 bp downstream
Tssr132185	transcription start site region 132185	1644 bp downstream
Tssr132186	transcription start site region 132186	1340 bp downstream
Tssr132187	transcription start site region 132187	508 bp downstream
Tssr132188	transcription start site region 132188	452 bp downstream
Tssr132189	transcription start site region 132189	437 bp downstream