rs242875814 SNP Detail

Summary

• ID
  rs242875814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6952287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTGACA GAATGAAACA
  GGGTCAGAAG AGGACTATGG TCCTAGTGGC GTGAAGATCC AGGCATCCGA CACCTAGAAG
  TCTAGGTTTG AGGCCAGAGG TTAAGTTATA GGAAACCGGA CAGACAGTCC CCAAACCCGG
  CAAAGTAGAT CCTCCCCTAT CCCCTTTCAG GAGGCGGGGT TGGGGAGAGG GGGCCTGAAG
  Y
  GGGGCTGGCC CTTTAAGGGG GTGTGGTCGG GGGGCGGGGG AAGAGAGCAA GACAGAGAAA
  GCGGCAGCGG CGGCGGCTCG GGCGGCGGCC GCGGGGGACA AAGGGCGGGC GGATCGGTGG
  GGAGGGGGCG GGGCGCGGCC AGGCCAAGCC CGGGGGCTCC GCATGCTGCA GCTGCCCCCG
  GGCGCCCCCG CCGCCGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683902	MGP_WTSI_19_7049409	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242875814					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683902	MGP_WTSI_19_7049409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6952287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	within coordinates
Plcb3	phospholipase C, beta 3	549 bp upstream
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	129 bp upstream
Rr370444	regulatory region 370444	1055 bp upstream
Rr543522	regulatory region 543522	within coordinates
Rr543523	regulatory region 543523	269 bp proximal
Tssr154704	transcription start site region 154704	237 bp downstream
Tssr154705	transcription start site region 154705	32 bp upstream
Tssr154706	transcription start site region 154706	129 bp upstream
Tssr154707	transcription start site region 154707	157 bp upstream
Tssr154708	transcription start site region 154708	192 bp upstream
Tssr154709	transcription start site region 154709	203 bp upstream
Tssr154710	transcription start site region 154710	219 bp upstream
Tssr154711	transcription start site region 154711	293 bp upstream
Tssr154712	transcription start site region 154712	1454 bp upstream
Tssr154713	transcription start site region 154713	1496 bp upstream
Tssr154714	transcription start site region 154714	1537 bp upstream
Tssr154715	transcription start site region 154715	1555 bp upstream
Tssr154716	transcription start site region 154716	1581 bp upstream