rs242877187 SNP Detail

Summary

• ID
  rs242877187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58991364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCCGGG CGGGCGGGCG
  GGCTGGCGGC GGGGCGGCGG CCTCTGAGCA GTCTAGAGGG CTCCGGGGCT GAGTGCGCGT
  GGACGCCGGC CGCGGCGGCG GCACTATGGG CACGGGGTAG AGGCGAGCTG CCGCCGCCAC
  CGGGGTGGTG GGAGAGCCTC TTCGGGGGAG GGGGCGGGAG GGGAGGGAGG GGAGGGCAGC
  R
  GCGAGGCTGC CGCACTTCGG CCAGTTTGCT CCGGTGCCGC AGCGGCGACC CTTCGGCGTG
  GATGTCCCTG GTCCCTGGAG CGACGACGGC CTCCGCCTGA GCTGGAAAGT AAGTGCGCGG
  GGCTGGCGGG AGGGCTCGGG GCTCTGGGGT GCTAGCTGCC CAGAGCGCGT CGAGCCGGGA
  CCTGGCGGCG GCCAGGCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354128815	MGP_WTSI_2_58999077	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242877187					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354128815	MGP_WTSI_2_58999077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58991364 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	337 bp upstream
Cpgi11668	CpG island 11668	within coordinates
Pkp4	plakophilin 4	within coordinates
Rr56883	regulatory region 56883	within coordinates
Rr396983	regulatory region 396983	180 bp downstream
Tssr17838	transcription start site region 17838	666 bp downstream
Tssr17839	transcription start site region 17839	195 bp downstream
Tssr17840	transcription start site region 17840	139 bp downstream
Tssr17841	transcription start site region 17841	124 bp downstream
Tssr17842	transcription start site region 17842	11 bp upstream
Tssr17843	transcription start site region 17843	597 bp upstream
Tssr17844	transcription start site region 17844	945 bp upstream
Tssr17845	transcription start site region 17845	1223 bp upstream
Tssr24158	transcription start site region 24158	385 bp upstream
Tssr24159	transcription start site region 24159	357 bp upstream