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rs242883254 SNP Detail
Summary
  • ID
    rs242883254
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr12:53861260 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTCTAAATT CTTCTTTCGG
    TCCCCAGAAC TAAATGTATT TAAAGTTCTC AAAACCACGC AGAAGAAAAC AGGAAAAATA
    ACTTGAGTCT AAAAATCCAG TGCTGATAGC TCCCACTTAG AGTCAGCCGC CCCACGTGTA
    CAGGGAACAG TGTAGTGTAC ACACATACAA GCCAGCACAC AGGCATGTTG GCATGTGCAT
    K
    CCTAGCATTG CAGAGGCACC AGCCTTCTTC AGAGCCACAG AGTACAAGAC TTGCCCCCTT
    CAGAGTGAGT GTCTTCTCAT GGTCAGCAGA GACGAGGCGT GAAAGAGACT TCAGGACTCA
    GGCAAAGTTG TCACAGGGAT GAAAGGCTTA CACACCTGAC GTGTTTTGTT CTGTCTGCTC
    ACCTTCAGAG ACATGGCCCC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324044510 CHEV_12_54915464 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs242883254 SNP T G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:53861260 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Npas3 neuronal PAS domain protein 3 within coordinates
Rr260842 regulatory region 260842 1060 bp distal
Rr267638 regulatory region 267638 1661 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory