rs242883254 SNP Detail

Summary

• ID
  rs242883254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53861260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAAATT CTTCTTTCGG
  TCCCCAGAAC TAAATGTATT TAAAGTTCTC AAAACCACGC AGAAGAAAAC AGGAAAAATA
  ACTTGAGTCT AAAAATCCAG TGCTGATAGC TCCCACTTAG AGTCAGCCGC CCCACGTGTA
  CAGGGAACAG TGTAGTGTAC ACACATACAA GCCAGCACAC AGGCATGTTG GCATGTGCAT
  K
  CCTAGCATTG CAGAGGCACC AGCCTTCTTC AGAGCCACAG AGTACAAGAC TTGCCCCCTT
  CAGAGTGAGT GTCTTCTCAT GGTCAGCAGA GACGAGGCGT GAAAGAGACT TCAGGACTCA
  GGCAAAGTTG TCACAGGGAT GAAAGGCTTA CACACCTGAC GTGTTTTGTT CTGTCTGCTC
  ACCTTCAGAG ACATGGCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044510	CHEV_12_54915464	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242883254					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53861260 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	1060 bp distal
Rr267638	regulatory region 267638	1661 bp distal