rs242891577 SNP Detail

Summary

• ID
  rs242891577
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86542486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGTAGA GGGTGGCAGG
  GGCTCTCCAA CCCCGAAGGA AACAAGGACC CAAGTTCCTT TGACATCCCC ATAAATATCA
  AAGAATGACT GGGCAATCTA GAGCCTCTTT TGTGAATCAG CCAGAGAGCG CGGTGGTGAA
  GTCCAGGCTA GCATAGAACA GGAAAGAACT TATGCAGATA CTTGAAAGCA AAAGCCGCAG
  W
  GCTTGCAAAA CAGCCTGGAT TGTGGCTTTG TAACTTCATA GAAACACCTT TCCGCCTTCC
  GAAAGATAGC AAAAGAGGCT CTTTCTGGTG AGGGAAGTCC CTAAGGCCAG CTTGTACGTT
  CCGAAATGTT TTCTAAGCTC TTTAGCCTCA TTTTAACCAA TTTTCCACCA GCACGCTTGC
  CTGCCTCTAA CACATCCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381139418	MGP_WTSI_10_86169367	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242891577					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381139418	MGP_WTSI_10_86169367	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86542486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	146 bp distal
Gm54730	predicted gene, 54730	1174 bp upstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	1178 bp upstream
Rr436507	regulatory region 436507	1323 bp distal
Rr436508	regulatory region 436508	768 bp distal
Rr436509	regulatory region 436509	within coordinates
Tssr95006	transcription start site region 95006	744 bp downstream
Tssr95007	transcription start site region 95007	730 bp downstream
Tssr98789	transcription start site region 98789	1224 bp upstream
Tssr98790	transcription start site region 98790	1151 bp upstream
Tssr98791	transcription start site region 98791	1130 bp upstream
Ttc41	tetratricopeptide repeat domain 41	within coordinates