rs242891591 SNP Detail

Summary

• ID
  rs242891591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46452472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCTCGT CTCCGCGCGC
  ACTGGAAGCG CGGCGCTCGG CCACCGCCGC CTCGTCCCCT CGCGGGCGCC CTCCCCCTTC
  TTAAAAGGGC AACGGTGGCC GACGCGGGGC TGGGGCGGCC TGGGCCCCGC ACGTGCTCCA
  CGCGGCGGCC TCTGCGGCCG GCTGTGCGCA GGCCGCGGGC CCGACGCCGC TCTCGTGCGC
  Y
  GCGGCGCGCG TGGGCTCGAC CCTGGGCCCA CGAGGTCGAG CGGGACAGGC GGCCTGGGCT
  GGCGCCCTCA GGTGACTATG GCTAACAAGT TGGGAACTTG TGGCGGTGGC GTGCCCGAGG
  CTTTGTGTTT GGAAAGGCCT GCCACAGGCC TTGAGGTCGG CCCCGCAGAA GTGTGGGGCG
  GTCCCTGAGG ACTGATTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361391789	MGP_WTSI_4_46465344	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242891591					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361391789	MGP_WTSI_4_46465344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46452472 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	within coordinates
Cpgi14257	CpG island 14257	within coordinates
Gm69233	predicted gene, 69233	979 bp upstream
Rr100990	regulatory region 100990	within coordinates
Tssr37119	transcription start site region 37119	1585 bp downstream
Tssr37120	transcription start site region 37120	1569 bp downstream
Tssr37121	transcription start site region 37121	1478 bp downstream
Tssr37122	transcription start site region 37122	1421 bp downstream
Tssr37123	transcription start site region 37123	1361 bp downstream
Tssr37124	transcription start site region 37124	1346 bp downstream
Tssr37125	transcription start site region 37125	1315 bp downstream
Tssr37126	transcription start site region 37126	248 bp downstream
Tssr41577	transcription start site region 41577	986 bp upstream
Tssr41578	transcription start site region 41578	100 bp downstream