rs242893724 SNP Detail

Summary

• ID
  rs242893724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:126863904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTACTG CGCTTCCAGA
  GGCCCTGAAT TCGATTCCCA GCAACCACAT GGTGGCTCAT AACCATCTGT AATGGGATCT
  GATGCCCTCT TCTAGTGTCT GAAGACAGCT ACAGTGTACT TACTTACATA TAATAAATAA
  ATCTTTTTTA AAAAATCAGG AAAAGTGAAA CTTCTGATAT TCAACTGAAA GTGGGGACCC
  Y
  AGCTTCAGCC ATGTCCTCTC TTCTTCTACT CATGCATCCT CCTATCATTA GAAAAATGCC
  AGGCTTTTTT TTTTTTTAAT GGTTTAAGTG CATTGTTTAG TTCGACTACA CTATATTTTC
  TTCTGCAGTG CTAGGGACCT CCCTCACAAT GCTAAGAAAG CATTCTCCCA ATGAGACACA
  CCCCAAGGCC CGTTTCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363166621	MGP_WTSI_4_126647355	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242893724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363166621	MGP_WTSI_4_126647355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:126863904 () rs orientation: forward

Symbol	Name	Function Class
4933424C08Rik	RIKEN cDNA 4933424C08 gene	729 bp downstream
Cpgi14832	CpG island 14832	1701 bp distal
Gm68857	predicted gene, 68857	729 bp upstream
Rr398497	regulatory region 398497	1745 bp downstream
Rr599780	regulatory region 599780	1987 bp distal
Rr599781	regulatory region 599781	1901 bp distal
Rr599782	regulatory region 599782	1409 bp distal
Tssr39026	transcription start site region 39026	1675 bp downstream
Tssr43406	transcription start site region 43406	1997 bp upstream
Tssr43407	transcription start site region 43407	1957 bp upstream
Tssr43408	transcription start site region 43408	1934 bp upstream
Tssr43409	transcription start site region 43409	1913 bp upstream
Tssr43410	transcription start site region 43410	1875 bp upstream
Tssr43411	transcription start site region 43411	1258 bp upstream
Zmym4	zinc finger, MYM-type 4	1976 bp upstream