rs242893888 SNP Detail

Summary

• ID
  rs242893888
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:91733161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGCTG CTGGGGCTTC
  AGAGTGGGGG TCACACTCAG GAAGTGTCTG CGGTATTTGA GTGGAGTCAT GGTGGGTGGT
  GACCAGAGTA TTCCCCAAGC AGAATGTATT TTGGTGAGGG CCCGGGGTGA GGGAGGCCAG
  TGGACCAAAT GATATTAGCA GCTCAGGAGG GTGAGTGTAC CCCAGGCTGG CAAGTGTACC
  S
  CAGGAGGGCA CTATTCTTCC TTGCCTCTTG ACAAACTCTT GTGAAAGTTA CCACCCCAGA
  ACCATCCAGC AGCTCCCAGC AAGGAGTGCT CCAAGTGGCT GTAGACCCTG GATCTTAAAG
  GATCTGAGTT CCAGTACAGA GCCAGCTTGG TAGTGACCTC AGATGATTTC CAAGCCACTG
  CATTGGCTGT TGGACAGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190297	MGP_WTSI_6_91706174	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242893888					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190297	MGP_WTSI_6_91706174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91733161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr379752	regulatory region 379752			234 bp upstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1939	transcription start site region 1939			937 bp upstream
Tssr57746	transcription start site region 57746			1200 bp downstream
Tssr57747	transcription start site region 57747			1006 bp downstream
Tssr57748	transcription start site region 57748			163 bp downstream
Tssr57749	transcription start site region 57749			23 bp downstream
Tssr57750	transcription start site region 57750			313 bp upstream
Tssr57751	transcription start site region 57751			414 bp upstream
Tssr57752	transcription start site region 57752			803 bp upstream
Tssr57753	transcription start site region 57753			1639 bp upstream
Tssr57754	transcription start site region 57754			1738 bp upstream
Tssr57755	transcription start site region 57755			1829 bp upstream
Tssr57756	transcription start site region 57756			1862 bp upstream
Tssr57757	transcription start site region 57757			1899 bp upstream
Tssr57758	transcription start site region 57758			1930 bp upstream
Tssr62094	transcription start site region 62094			943 bp upstream