rs242893998 SNP Detail

Summary

• ID
  rs242893998
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:5296692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGGCTC ATGGAATCTA
  TTATCCTAAA CTCATCAACT ATTCTATGTT GGAACTCTTC CGATGGCGAT CACCACTAGA
  TCTAACAGTT CCTAGTCTAC ATGTTACCTC CTTTTGCTTC TGCCTCGCCG TACAAAAAAA
  AGACTGTGCC CTCCTTCGGT ATTCCCTCTT CCTGTCTCTC GACCTGGAAG CCCCCCCCCC
  G
  CCCCCCCCCC CCGCCCGCCC AGAGATTGAC TTTTTTTTTT TTTTTTTCCC AGACAGGGTT
  TCTCTGTGTA GCCCTGGCTG ACCTGGAACT CACTTTGTAG ACCAGGCTGG CCTCGAACTC
  AGAAATCCTC CCAAGTGCTG GGACTAAAGG CAGGTGCCAC CATGCCCGGC TCCAGAGATT
  GACTTCTTGT CGTATTTATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C57BL/6J	C57BL/6NJ	CBA/J	LP/J	SJL/J	SPRET/EiJ
ss348480841	MGP_WTSI_1_5216550	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C57BL/6J	C57BL/6NJ	CBA/J	LP/J	SJL/J	SPRET/EiJ
rs242893998					SNP	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348480841	MGP_WTSI_1_5216550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:5296692 () rs orientation: forward

Symbol	Name	Function Class
Rr27102	regulatory region 27102	1350 bp distal
Rr370760	regulatory region 370760	1144 bp upstream