rs242909623 SNP Detail

Summary

• ID
  rs242909623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72775487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGCAA TAAGGGGAGG
  GTGTATGGTG GTGGCAGTGT TTGAGTAGAG TGCCTGGAAA GTTCCTACCA AAAGTGATAA
  ATTTGCTTGC CTGCCTGCCC GGGAAAAATT GTCTCCAGTC CATCACTACA ATTGATCCCT
  GGTTCCCTGG GACCTGGACA AGACAAAAAG CAGCCTGGCT GACTACAGCA TTCATTCGGT
  R
  TCACGGATCT GGCTGCTGCA GGAGCTGGAG CGCCACGATC CAGGCCTAAG CAGAAGCCAG
  GCGCTCACAG GCAGGAGAAC TCTGCCGCCC TCTACTAGCT TCAGAGCCCA CCGAGAATAA
  AATGGAAGCT CAGGCCCGCG CGCCAGGTTT CAGAGTCCTC GTGCTCTACC TAGCAAGCTT
  CAAGGAGACA CCTGTTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389037597	MGP_WTSI_13_72764816	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242909623					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389037597	MGP_WTSI_13_72764816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72775487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5830	CpG island 5830	1884 bp distal
Cpgi5831	CpG island 5831	2 bp proximal
Gm20554	predicted gene, 20554	within coordinates
Irx2	Iroquois homeobox 2	1452 bp upstream
Rr273617	regulatory region 273617	114 bp proximal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	1418 bp upstream
Tssr120306	transcription start site region 120306	1434 bp upstream
Tssr120307	transcription start site region 120307	1463 bp upstream
Tssr123170	transcription start site region 123170	1117 bp downstream
Tssr123171	transcription start site region 123171	1195 bp downstream
Tssr123172	transcription start site region 123172	1222 bp downstream