rs242916053 SNP Detail

Summary

• ID
  rs242916053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68598429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCCACT GGCAGCCAGG
  CAATGCCTTC TTGCAGATCT GGAGGCTTCA GGAGCCTTTG CTGCCTCTTA GGCTCCTGCA
  GAGAGATGGC CTTGCTCTCT CTGGGCCCTT TTCCCCCAAG ATGCTGTGCA GTCGTCTCAC
  TAAATCAAAA CTGCCAGAAC TGAGTTTTAA GCGATATATA GCCACCACAT CTATTTTGTT
  Y
  CTTTATACTT TCAAAGTAGG ACAGATTCGC AAAATACATT GAGTCAGACT CAGTGTCCAC
  GATGGAGAGA CGAGTGGGTA GCTTGTGCTT CTTTAGAAGG GGCACTGGGC AGCGTGTTAG
  GGCTAGGGGG TAGTGGGGCA GGACAGACCT GTCCCGGGAC AAGAGTGGCT ACTCGCAGGC
  CGGTTTTGCT TTCGCTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358306633	MGP_WTSI_3_68495018	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242916053					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358306633	MGP_WTSI_3_68495018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68598429 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	42 bp proximal
Gm66274	predicted gene, 66274	227 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	166 bp proximal
Rr578060	regulatory region 578060	1469 bp proximal
Tssr29479	transcription start site region 29479	233 bp upstream
Tssr29480	transcription start site region 29480	271 bp upstream
Tssr29481	transcription start site region 29481	276 bp upstream
Tssr29482	transcription start site region 29482	334 bp upstream
Tssr29483	transcription start site region 29483	400 bp upstream
Tssr29484	transcription start site region 29484	531 bp upstream
Tssr29485	transcription start site region 29485	828 bp upstream
Tssr29486	transcription start site region 29486	849 bp upstream
Tssr29487	transcription start site region 29487	959 bp upstream
Tssr29488	transcription start site region 29488	977 bp upstream
Tssr33509	transcription start site region 33509	1108 bp downstream