rs242928837 SNP Detail

Summary

• ID
  rs242928837
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49594756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTATATA TTCCTTAAAA
  TTATGAAATA ATACCCATTC ATAACTGGTA GTTAGATCTC CTTCTAGTGT GATTCATGCT
  ATCAGTTTGG TTATCTTTCC AGACACGTTC CTATGGTAAC AGCATGTACA TAACACAGGT
  GCTGCTGCTG GCGTCTCTTT TGGATTGTTT GTACTTGTTC TACCCAGTGC TCCCCCCCCC
  G
  CCCCCCCCCG TACAGTGATC TTTGAGCGTT TTGTGTTGTA TGTTTTTCTC AAAATGTATT
  TGATACACAA GTATCCCTTT AAAGCAAGCA TGACATCATA TTACATGTGC TGCTTTGTCA
  GCTGAGTAAG CGCTGATAGG TGCTAGTCCG TCTTTTGGAG TGGCTGTATT CACACTCATT
  CACCCCTTCA TGGCGTGTGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	ST/bJ	SWR/J
ss388564330	MGP_WTSI_13_49536649	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	ST/bJ	SWR/J
rs242928837					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388564330	MGP_WTSI_13_49536649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49594756 () rs orientation: forward

Symbol	Name	Function Class
Ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	within coordinates
Rr276357	regulatory region 276357	1556 bp distal
Rr276358	regulatory region 276358	1645 bp proximal
Rr279502	regulatory region 279502	1275 bp distal
Rr279503	regulatory region 279503	within coordinates