rs242930736 SNP Detail

Summary

• ID
  rs242930736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92425153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCAGCC AGAGGAGAGC
  CCCGCCGCCT ATTTGTCTCA ACGGGACTTG CAGCGCTGCT GTATCGCGCA GGGGAGTTCT
  TTGGTCCTTT CTACTTCTGG GCCCTGGGCT CAGCTCCCTG GAACTGAGCC TTGCGTTTAA
  ATGACCCGAT GCACTCTGGT GATGAGTGGG TGGATGCGCT AATTTTGCAT TCTATAGTAA
  Y
  TAATTAGATT CTTTTCCTCT GGAAACTAAG GCGAGGAGCA AACATTTCTA CCTTGGAATT
  CCAATTCAGA GGGTAACACT TGGCACAAGT CCAGTTGGAC CCTGTAACCA TCGGTTTTTG
  TCTTTCTCAT GGCGCAATAG GTGAAACTTA AGGACTCAGA AGCACCTGGT TCTGTGGAAC
  AGTGCTCGCT TTGTTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074162	CHEV_9_92437938	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242930736					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92425153 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	231 bp upstream
Cpgi22147	CpG island 22147	123 bp distal
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Rr684632	regulatory region 684632	826 bp distal
Rr684633	regulatory region 684633	161 bp distal
Rr684634	regulatory region 684634	34 bp distal
Tssr86520	transcription start site region 86520	828 bp downstream
Tssr86521	transcription start site region 86521	661 bp downstream