rs242932451 SNP Detail

Summary

• ID
  rs242932451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23296553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTGTGAA GCAGAGATCC
  GATGGAAATT TTATCTTCAG TTAGATTAAA ATGAGGCATT CGGTAAGATG AAGTGTGAAG
  GGGGTTGCAA AAACTGCTGG GCACACTGTA AGATGAAATG ACAAACTGCG GTGATGACGG
  TCGTGCCAAT CTAGATGAGT CTCCGAAAGG TCTCTGGCAG TACCTAAAAA CAAGAGGCCC
  Y
  ACCTCAAATC AGATGGAAGG TGAGGAGTGA TATTCTGACT CCTACAAGTG TTTCCATGCA
  CAAATGCAAA CGCGTACCTC ATACATGCAA AAACGGGTGT GTGTGTGTGT GTGTGTTTAT
  TTTCCCTTTC GTTTTGTTAC TTGAGACAGT TTCGCTGAAC AATTCTGGCT GGCCGGGAAG
  TCTCCAGATC GGGACAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373939541	MGP_WTSI_8_23917009	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242932451					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373939541	MGP_WTSI_8_23917009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23296553 () rs orientation: forward

Symbol	Name	Function Class
1700041G16Rik	RIKEN cDNA 1700041G16 gene	within coordinates
Ap3m2	adaptor-related protein complex 3, mu 2 subunit	915 bp upstream
Cpgi20156	CpG island 20156	634 bp distal
Cpgi20157	CpG island 20157	1320 bp proximal
Rr186374	regulatory region 186374	within coordinates
Rr381798	regulatory region 381798	1725 bp downstream
Rr400791	regulatory region 400791	670 bp downstream
Rr400792	regulatory region 400792	within coordinates
Rr400793	regulatory region 400793	414 bp upstream
Rr400794	regulatory region 400794	1255 bp upstream
Rr400795	regulatory region 400795	1587 bp upstream
Tssr80612	transcription start site region 80612	888 bp upstream