rs242932916 SNP Detail

Summary

• ID
  rs242932916
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60234158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGCTTGG GTAAATCACT
  TCTTTGGTCT GAGGCCACTG TTCTTCCTTG AGTGAATATG TTTGTTCTTG TCTCCCTCTA
  CTGACCCCAC ACTGAGGAAG GGCTTTGTGC AATGCCATGT TACTACTCTC TGGCACATAG
  CAGGGTTGTT TGCTTTTGTG TTGTTGTTTT GAGATTAGAG TTCAAAAAGT CCAGGCTGGA
  T
  TTGAACTCTT GATCTTCCGG CCTCTAGGTC CCAAGTGCTG GATTACAGGA GGTCATCACC
  ACACCTGGCT TTTAATATAT TTGCTGAATG GAGATGTAAA TGACTAAGTG GCCAGTCTCT
  GGTGAGGGAC TGAGTTGACC CTCAGCAAGC ACCGATAAAA GACGCGTGCA ACATACAGCA
  TCGAAACCTT CAGATCTTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325356	CHEV_10_59861127	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242932916					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60234158 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	1485 bp upstream
Rr215449	regulatory region 215449	within coordinates
Rr223077	regulatory region 223077	within coordinates
Rr228097	regulatory region 228097	644 bp proximal
Tssr93633	transcription start site region 93633	1370 bp upstream
Tssr93634	transcription start site region 93634	1423 bp upstream
Tssr93635	transcription start site region 93635	1470 bp upstream