rs242940484 SNP Detail

Summary

• ID
  rs242940484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCCGC CCCCAACAAC
  ACACACTTGT CAAAGATCCT TGGGAGAGGA AAAGAATATA TCAAACTCAG GCCAAAACCA
  AAATAAACTT TTCGCGCCAG AACATCTACG GTGCTTTGGT ATCATTCTCC CAGGTTGGCT
  TTAGGCGGCG CCTCCACCTG TAATCCAGGA CGCTCTGCGG AGCAGTTCTG GGTCCCTGGG
  R
  GTCGGAGCCA AGAGCTTTGA GCCGAGACCA GGATGCTTCA TGCGGGCTTC GCAGAGGTTT
  AGAGTCCTGA TTGGCAAGCC CTTAACACTC TTCACTTTGG GGGCCCTTGC CACTAGGACT
  CTTCACTTTG AGGGTTGAGT GTGGTAGGCA GAGGTCCATC CTGATTCTTA TTCACCTATG
  TTATTATTAT TAGGCGATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137453	CHEV_9_99777240	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242940484					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	351 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	97 bp downstream
Rr685463	regulatory region 685463	1093 bp distal
Rr685464	regulatory region 685464	662 bp distal
Rr685465	regulatory region 685465	161 bp distal
Rr685466	regulatory region 685466	962 bp proximal
Sox14	SRY (sex determining region Y)-box 14	651 bp upstream
Tssr91083	transcription start site region 91083	628 bp upstream
Tssr91084	transcription start site region 91084	609 bp upstream