rs242941821 SNP Detail

Summary

• ID
  rs242941821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGTGGCA GCCGAAAGTG
  GTTATCTTCC TCCACCTCTT ACCGTCTCTG GAAAAATTAA AAAGAAAGAA AGAAAGAAAA
  AAACACACCC GAAAACACCA ACCAAAGTGC TTAGTGAATC AGAATGGGTC ACTTATGGAG
  GCTAAGAGCA GCTGGGGCAG CAAGATCTGT CCCCGCGGTG CGCAAACCGC GGACTCTGGG
  R
  CGATGGCGGC CGGGTCAGGC CACCCCAGAG CGGCCAGGCG GGGCTGCTCA CCGGCAGCTG
  GCAGGGCGGC CGCGGCGGGA GGCCCCACGG GGGCGAGAGG CCCCGCGACG TCGGCACTGG
  GCGGGGGGAG GGTGGCAACA CTGGGAGCGG GGAGCACGGG GGCAGGTGGT GGCGCTGCGG
  GGGGGGGGGC GGTGGCAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433253	MGP_WTSI_3_30993041	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242941821					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433253	MGP_WTSI_3_30993041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	118 bp downstream
Rr397631	regulatory region 397631	302 bp downstream
Rr574879	regulatory region 574879	212 bp distal
Rr574880	regulatory region 574880	158 bp proximal
Rr574881	regulatory region 574881	449 bp proximal
Rr574882	regulatory region 574882	1017 bp proximal
Rr574883	regulatory region 574883	1048 bp proximal
Rr574884	regulatory region 574884	1712 bp proximal
Skil	SKI-like	991 bp upstream
Tssr28706	transcription start site region 28706	212 bp downstream
Tssr28707	transcription start site region 28707	69 bp downstream
Tssr28708	transcription start site region 28708	547 bp upstream
Tssr28709	transcription start site region 28709	575 bp upstream
Tssr28710	transcription start site region 28710	600 bp upstream
Tssr28711	transcription start site region 28711	818 bp upstream
Tssr28712	transcription start site region 28712	842 bp upstream
Tssr28713	transcription start site region 28713	933 bp upstream
Tssr28714	transcription start site region 28714	1778 bp upstream
Tssr32911	transcription start site region 32911	1708 bp downstream