rs242948644 SNP Detail

Summary

• ID
  rs242948644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136189473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTTCAC TGCGTAGCCT
  AGATTGGCCT AGAACTGGAC ATGTAGATCA GAATAGCCTT AAAGCCTGTC TCTCCCTCTT
  GGATGTTGGT TATCTTATTT ATTTTGGTGT TTATGGTGTG TGCGTGTGCG TGCACATGTG
  TGTGCATCCT TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGCGCGCG CACATGTGTG
  Y
  ATCCCTGTAT GTGTGTGTGT GTGCGTGCAT GTGTGTCCAT CCTTGTATGT GTGTGTATGT
  GTGCACATGT GTGTGCATCC TTGTATATGT GTGTGTGTGT GCGCACATGC ATGTGTGTGC
  AAGGCATGAG ACTGAGGTCT CATTATCCCT CCATTACTCT TCAAATTTTT TCATTGAGGC
  AGGGTCTCTT AAGCAAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321699068	CHEV_5_136636489	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242948644					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136189473 () rs orientation: forward

Symbol	Name	Function Class
D5Mit341	DNA segment, Chr 5, Massachusetts Institute of Technology 341	1104 bp proximal
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53792	transcription start site region 53792	127 bp downstream
Tssr53793	transcription start site region 53793	329 bp downstream
Tssr53794	transcription start site region 53794	588 bp downstream
Tssr53795	transcription start site region 53795	626 bp downstream
Tssr53796	transcription start site region 53796	673 bp downstream
Tssr53797	transcription start site region 53797	704 bp downstream
Tssr53798	transcription start site region 53798	762 bp downstream
Tssr53799	transcription start site region 53799	776 bp downstream
Tssr53800	transcription start site region 53800	796 bp downstream
Tssr53801	transcription start site region 53801	1403 bp downstream
Tssr53802	transcription start site region 53802	1439 bp downstream