rs242949622 SNP Detail

Summary

• ID
  rs242949622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76798283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTTCAC TTCCATTTGA
  TGTCTAAAGA GTAAGTCCTT CCCATCCTTG GGTATCTTAT CACTGAACCT CAGGACCACA
  GGGCAGAAAG GGACTTGAAA ATTAATTTTC TCAAATTATC CTATAATCAA CTGTCTCCCC
  TGACCAACAG TTCTACCAAC AGGCCTTCTC CCATCTGTCC ACAAGTGCTT TTTAGTCCAA
  Y
  CTCTCACTAT TCAACCTACT ACATGTAGGT ATGTATGTCA TACATCCTAT ATGAAACCCA
  TGTGCTAATG TCCAAGGGGT CAGGAAGCGG CACCAAGCTT TTAATGTAGC ATATTCTGTT
  TTCCCTTACA TTCTTGCCTG TTTCATCCAC AACACCTGCA TCATCTTTCC GTTCTCACTC
  TGCCTGTTCC CTATCCATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354535395	MGP_WTSI_2_76805996	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242949622					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354535395	MGP_WTSI_2_76805996	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76798283 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	1172 bp proximal
Tssr18508	transcription start site region 18508	508 bp upstream
Tssr24819	transcription start site region 24819	834 bp upstream
Tssr24820	transcription start site region 24820	518 bp downstream
Tssr24821	transcription start site region 24821	537 bp downstream
Tssr24822	transcription start site region 24822	564 bp downstream
Tssr24823	transcription start site region 24823	1225 bp downstream
Tssr24824	transcription start site region 24824	1252 bp downstream
Tssr24825	transcription start site region 24825	1717 bp downstream
Tssr24826	transcription start site region 24826	1769 bp downstream
Tssr24827	transcription start site region 24827	1786 bp downstream
Tssr24828	transcription start site region 24828	1874 bp downstream
Tssr24829	transcription start site region 24829	1986 bp downstream
Ttn	titin	within coordinates