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rs242953809 SNP Detail
Summary
  • ID
    rs242953809
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:135777251 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCCATTGAT CTATTCATTC
CATCTCCATG ACAACAGGAA GAGAGGGCCC GGCGTGAGGA GGAGGAGAAC AGGAGGAAGG
CTGAGGATGA GGCCCGGAAG AAGAAGGCTC TGTCCAACAT GATGCACTTT GGAGGGTACA
TCCAGAAGGT AGGTGCAAAG CAGCATCGGG CACCAGGACA CCCCAGTGTA TCCTCAAGGC
Y
GCCTTTGCTT GGATCCATGA AGAAATTCCC AACTGCTGTG GCTGAAGTCT AAGGTCTGCT
CATGTCTAGC CCCTGAGCTG TCTATCAGCC TGACCATGGC TTCAGTAGGA GGGCTCTGCT
GTGTGTGACA GTTAGAACAC TAATATGTCT CCAAATTCTG GCTCCCCAAA GGGACAACTG
GGAGAATCTT GGGTCCTGGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351552078 MGP_WTSI_1_137746090 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242953809 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351552078 MGP_WTSI_1_137746090 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:135777251 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr12644 regulatory region 12644 1651 bp distal
Rr12645 regulatory region 12645 1150 bp proximal
Tnnt2 troponin T2, cardiac within coordinates
Tssr225 transcription start site region 225 1773 bp downstream
Tssr226 transcription start site region 226 1503 bp upstream
Tssr227 transcription start site region 227 68 bp upstream
Tssr9015 transcription start site region 9015 1777 bp downstream
Tssr9016 transcription start site region 9016 1525 bp downstream
Tssr9017 transcription start site region 9017 1487 bp downstream
Tssr9018 transcription start site region 9018 1469 bp downstream
Tssr9019 transcription start site region 9019 1436 bp downstream
Tssr9020 transcription start site region 9020 665 bp downstream
Tssr9021 transcription start site region 9021 645 bp downstream
Tssr9022 transcription start site region 9022 157 bp downstream
Tssr9023 transcription start site region 9023 83 bp downstream
Tssr9024 transcription start site region 9024 47 bp downstream
Tssr9025 transcription start site region 9025 232 bp upstream
Tssr9026 transcription start site region 9026 434 bp upstream
Tssr9027 transcription start site region 9027 544 bp upstream
Tssr9028 transcription start site region 9028 584 bp upstream
Tssr9029 transcription start site region 9029 1164 bp upstream
Tssr9030 transcription start site region 9030 1199 bp upstream
Tssr9031 transcription start site region 9031 1258 bp upstream
Tssr9032 transcription start site region 9032 1841 bp upstream
Tssr13890 transcription start site region 13890 1738 bp upstream
Tssr13891 transcription start site region 13891 1493 bp upstream
Tssr13892 transcription start site region 13892 1426 bp upstream
Tssr13893 transcription start site region 13893 1409 bp upstream
Tssr13894 transcription start site region 13894 660 bp upstream
Tssr13895 transcription start site region 13895 616 bp upstream
Tssr13896 transcription start site region 13896 89 bp upstream
Tssr13897 transcription start site region 13897 61 bp upstream
Tssr13898 transcription start site region 13898 1224 bp downstream
Tssr13899 transcription start site region 13899 1292 bp downstream
Tssr13900 transcription start site region 13900 1302 bp downstream
Tssr13901 transcription start site region 13901 1863 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory