rs242958828 SNP Detail

Summary

• ID
  rs242958828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116252659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTCCTT AAATCCCAAC
  TTCATGCTAA GGGTAGCACG TCTGCCTGCG GGATTAGAAG AAAGCTGAGG CCATTGCTAA
  GTTGTCCCCT CCACTGAAAA TATGCATCTC ATCTGAATGA GGCTTGGTTC TAGGTGGTAA
  ATAGGGGCCG GGGGAGGGGA TCGAATATCT GCTGAGACTC ATGGTTGATA TTTGAAACTC
  M
  GTCTATGAAC AGATGCAAAG ATGATGGATG GCTTGGATGC ACTTGGAGTG TCACCACAGA
  GCTCTGGCTG TCCTAGAACT CCCTGTGAAG ACCAGGCTGG CCTTGAACAC AGAGAGATCC
  CTGTGTGCTA CCACGCCCAG CTTTGTCACA CTTTTGAAGG CACAGAAAGC CCAGCAGCAG
  TGGAGTGAGC CAAGCTGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323488221	CHEV_10_115853810	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242958828					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116252659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2214	CpG island 2214	1418 bp proximal
Gm67349	predicted gene, 67349	within coordinates
Kcnmb4	potassium large conductance calcium-activated channel, subfamily M, beta member 4	1107 bp downstream
Kcnmb4os1	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	1367 bp upstream
Rr439316	regulatory region 439316	117 bp distal
Rr439317	regulatory region 439317	1394 bp proximal
Tssr95869	transcription start site region 95869	1294 bp upstream
Tssr95870	transcription start site region 95870	1363 bp upstream
Tssr95871	transcription start site region 95871	1385 bp upstream