rs242962312 SNP Detail

Summary

• ID
  rs242962312
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57800164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTGCAT TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCCCTC CCTCCCTCCC TCCCTCCAGG TGCTGAGACC
  TTGTTTTTAC TGCCTTATTT TTTTAAATCA GCACAGAAAA AAAGTCCATT CCAAAAAACT
  CTTGACAACC AACGTCACTA TGATGGCATC AAATCAACAA AGCAGTAGAT TAAAAAAAAA
  M
  AAAAAAAAAA CTGATGACAA GCAACAATCT TAGCGCATCA TATTTGATGT TACTTTTGGT
  TTCCCTTCTC CCCCAGAAAA GCTAATTCAA TTGACTTGAC TCATTTTGAA GGCTTTTCCA
  CTGCTGGCCC TTGAATGTAA AGCCTTAGAG TGTTGGCAGG TCTGCCACTT CTCTCATGTT
  CATTTCCTCA ATAAACATCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
ss368438958	MGP_WTSI_6_57773173	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J
rs242962312					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368438958	MGP_WTSI_6_57773173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57800164 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			1249 bp proximal
Rr399671	regulatory region 399671			within coordinates
Rr631165	regulatory region 631165			within coordinates
Rr631166	regulatory region 631166			308 bp proximal
Rr631167	regulatory region 631167			1002 bp proximal
Rr631168	regulatory region 631168			1290 bp proximal
Rr631169	regulatory region 631169			1947 bp proximal
Tssr56734	transcription start site region 56734			533 bp upstream
Tssr56735	transcription start site region 56735			1306 bp upstream
Tssr56736	transcription start site region 56736			1358 bp upstream
Tssr56737	transcription start site region 56737			1466 bp upstream
Tssr61164	transcription start site region 61164			1454 bp downstream
Tssr61165	transcription start site region 61165			1876 bp downstream
Tssr61166	transcription start site region 61166			1965 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant