rs242963594 SNP Detail

Summary

• ID
  rs242963594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42151016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCGCAG AGCTGTTGCT
  GTCGCCCTTA TCCTTGAAGT AGGGCACACA GCGCACCATC CACTCGTAGA TCTGGGACAA
  AGTGAGCCGT TTGTCCGGGG AGCTCTCGAT GGCGCGGGTG ATCAGGTCGG CATAGGACAG
  GTTCCCCCAG GCATTCCGCC GCGAGGAGCA TTTCCTTGGT TGCCCAGAGC CCCCAGCCGC
  Y
  CCCGGCTGCG GCTGTGGCAG TGGCTGCTGA GGCTGCAGCT GCGTCGGCGT GCCCCCACTC
  AGAGCGCCTG CGGCGGACGC TGGCCCCGAC CCGAGGTCCT GCCCTCCTGG AGCCAGCAGC
  ATGGCCGAAT CCTCGAGGAG CAGCCCGGAA CCCAGCGTGC TGCTCACGCC GCCACCGATC
  ACCATGGCCG AGCTGGCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380164367	MGP_WTSI_10_41994826	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242963594					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380164367	MGP_WTSI_10_41994826	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42151016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	within coordinates
Gm38485	predicted gene, 38485	818 bp upstream
Gm56983	predicted gene, 56983	1865 bp downstream
Gm66047	predicted gene, 66047	1848 bp upstream
Rr430523	regulatory region 430523	869 bp distal
Rr430524	regulatory region 430524	1666 bp proximal
Rr430525	regulatory region 430525	1859 bp proximal
Tssr93078	transcription start site region 93078	922 bp downstream
Tssr93079	transcription start site region 93079	1872 bp upstream
Tssr97432	transcription start site region 97432	1077 bp upstream
Tssr97433	transcription start site region 97433	604 bp downstream
Tssr97434	transcription start site region 97434	1625 bp downstream
Tssr97435	transcription start site region 97435	1645 bp downstream
Tssr97436	transcription start site region 97436	1668 bp downstream
Tssr97437	transcription start site region 97437	1724 bp downstream