rs242966987 SNP Detail

Summary

• ID
  rs242966987
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56327113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCGATTT GATGTTACCG
  TAATAAAGGG CACTAATGTG TTACATACTT AGAACTGTTC CTTTAGGACT TAAGGATTCA
  CCTCATGCTG GAGAAGACAT CATCCACTTT AGTGTTGTTT TCATGTAGCT TTCTTGGGAT
  GTTTATGAAA GATGCATTTT ATGGTGTCTC CCCGTTTGTA ATTTGAGTTT GTTACTGATT
  K
  AAAAATGAGG TCTATTTATG GTTTTAAAAC CTGGCCAAAG GATGGCAAGT TCAGTGACGT
  ACTGAGTGAG AGGAAAATGT CTCGGGAAGA ACTAAAGATG AGGCAGACAG AACTTTCTGG
  TTTTCTATAT TCTGCTTAAA ACACACACAC ACAAACAAAT AAGAAACTAT ATCTGAAGTA
  ATAAGCAACT ATTTTGATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377668732	MGP_WTSI_9_56267636	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242966987					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377668732	MGP_WTSI_9_56267636	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56327113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	997 bp distal
Hmg20a	high mobility group 20A	within coordinates
Peak1	pseudopodium-enriched atypical kinase 1	1762 bp upstream
Rr206471	regulatory region 206471	within coordinates
Rr368756	regulatory region 368756	1146 bp downstream
Rr368757	regulatory region 368757	629 bp downstream
Rr401386	regulatory region 401386	1517 bp downstream
Tssr85252	transcription start site region 85252	1430 bp downstream
Tssr85253	transcription start site region 85253	1404 bp downstream
Tssr85254	transcription start site region 85254	1148 bp downstream
Tssr85255	transcription start site region 85255	1120 bp downstream
Tssr85256	transcription start site region 85256	982 bp downstream
Tssr85257	transcription start site region 85257	955 bp downstream
Tssr85258	transcription start site region 85258	340 bp downstream
Tssr89707	transcription start site region 89707	1777 bp upstream
Tssr89708	transcription start site region 89708	1748 bp upstream
Tssr89709	transcription start site region 89709	1719 bp upstream
Tssr89710	transcription start site region 89710	983 bp upstream
Tssr89711	transcription start site region 89711	866 bp upstream