rs242968795 SNP Detail

Summary

• ID
  rs242968795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115708430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGGATG GTTCTCTCTC
  TCTCTCTCTC TCTCTCTCAA CTCAGGCCAT CACAACAACC CTCTCGTTTT TAATTTTTGA
  TGTTTTTCAA GGCAGGGTCT CTACGCAGCC CAAGGTGACC TTCAAATTAG GATTCTTCTG
  CCTCAACCGT CAGAGCAACT AGAGTTACAG GTGAGTGCCA CAGTACCATG CCTGGCATGC
  Y
  AGGTTTCTCC TGTGTGTGTG TGTGTATGCG TGTGCATGTG CGTGTGTGTG TGTTACTGTG
  TTGCCTTGGG TGACTTGAAA CTCCCTGTGT AGACCAAGCC GGCTTTGATT TCACAGATAT
  CCACCTGCCT CTGGCTCCAG AGTACTAGGA TTAAAAGCAT GTGCCACCAT ACCCAGCTAT
  TTGTTTGTTT GTTTGTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369758786	MGP_WTSI_6_115681487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242968795					SNP	C	C	C	C	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369758786	MGP_WTSI_6_115681487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115708430 () rs orientation: forward

Symbol	Name	Function Class
Rr132360	regulatory region 132360	771 bp proximal
Rr147096	regulatory region 147096	972 bp proximal
Tmem40	transmembrane protein 40	within coordinates
Tssr58323	transcription start site region 58323	493 bp upstream
Tssr62527	transcription start site region 62527	379 bp upstream
Tssr62528	transcription start site region 62528	354 bp upstream