rs242976095 SNP Detail

Summary

• ID
  rs242976095
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149439531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCAGCTG GTCCTCAAGG
  CCCTCAATAC GCATGCGCTA TGGTGGACAG GACCATTCTA ACCATCTCAT GTCCACATAT
  GTCCCCCGCT CTCAGAGCTA CAGAACATCT CGATCCCACC GCCTCCTCCT CCTACATCAT
  TTCTCAGCCC GTCCCCCCAC CCCAGGCTCC ACAGGGCCTC TTCGCGCCAC CCCCTCCTAC
  C
  ACCATCCCAC CCCACCCCCG CCCCCATTCC TGTGCGGCCG CGCCAGCCCG CGCCAACCAT
  CAGCCACTCA CTCAGGCTGT GGTTCCGCAG TCCTCCGCAC CTCCCACCCT CCTCAAGCCC
  CCTCCCCCCC CACCCGCGCC GCAGTCGCCT TCGCCAACAC TATCCCCCCT CGCCCCCCCC
  CCCCCCGGTC CACGTCTGCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss404874784	MGP_WTSI_X_147091078	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs242976095					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404874784	MGP_WTSI_X_147091078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149439531 () rs orientation: forward

Symbol	Name	Function Class
Rr694335	regulatory region 694335	117 bp distal
Rr694336	regulatory region 694336	854 bp proximal
Tro	trophinin	within coordinates
Tssr164370	transcription start site region 164370	1623 bp upstream
Tssr164371	transcription start site region 164371	939 bp upstream
Tssr164372	transcription start site region 164372	587 bp downstream
Tssr164373	transcription start site region 164373	831 bp downstream
Tssr164374	transcription start site region 164374	857 bp downstream