rs242979606 SNP Detail

Summary

• ID
  rs242979606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32386482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCGGG CGGGCAGCAT
  TTACAATCTG GCCAGGGGTT TCGTGGATAT GAGTCTCATG TACCTGTGTG CAGCTCTCCT
  ACAATGTGAA GATCACAAAG GTCTACCGAA GAGGGAAAGG TGCTTGCTGC CAATCACAGA
  CACCCGAGTT CAATTCCTGG GCCTCCCATG CTAAAATAAA AAAACCAACA CATACATTGT
  Y
  TTCTGACTGC CACATGTACC CCGTGATACA CATGCACTCC TACACACACT GTGCTCGAAT
  GCTTGCACGC ACGCGCGCGC ACACACACAC ACACACACAC ACACACACAC GCTTATGTGC
  GCAAGAAATA AGATAAAATA CTTTGTAAAA AAAATCCACA CCAGCTCCTA GCACATCCCA
  CACTCTACAT GGTTTTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325361636	CHEV_17_32304453	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242979606					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32386482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8964	CpG island 8964	1248 bp distal
Cpgi8965	CpG island 8965	377 bp distal
Notch3	notch 3	656 bp upstream
Rr334850	regulatory region 334850	1919 bp proximal
Rr339597	regulatory region 339597	81 bp distal
Tssr147344	transcription start site region 147344	736 bp upstream
Tssr147345	transcription start site region 147345	610 bp upstream