rs242979932 SNP Detail

Summary

• ID
  rs242979932
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCCTCT TTTATGATTG
  GTACTCAGAG ACCAGCAGTG GGAACTGGGA CTCCTGGGAC TGCAGTTACA AGAGATTTTG
  AGACACCATG TGGGTGCGGG TGCGGGTGCG GGTGCTAGGA ATCAAATGTA GGTCCTCTGG
  AAGAGCAGCC AGTGCTCTTA ACCACCGAAC CATCTGTTCA CTCTTCTTTT ATCTTTTAAA
  W
  TTTACATTTA AAAAATTATT TTGTGATCTT GTGTGTGTGT TAGTGTACAC ATACGAAAGC
  ATACGTGTGG GTATCAGAGG ATAACTTAGG AAAATTGAGT CTCTCCTTCT AGCTCCAAGA
  GCTTAAATTC AGGTCTTCAA GCTTGGCAGC AACTTTATCA GATAAATCAT GTCACTGAGT
  TCTTTTGTCT TGGTATATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291485	CHEV_13_23850904	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242979932					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943018 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1397 bp upstream
Cpgi5375	CpG island 5375	1538 bp distal
Cpgi5376	CpG island 5376	1644 bp proximal
H4c1	H4 clustered histone 1	1760 bp downstream
H4c2	H4 clustered histone 2	1626 bp downstream
Rr388131	regulatory region 388131	1177 bp downstream
Rr388132	regulatory region 388132	761 bp upstream
Rr475944	regulatory region 475944	907 bp distal
Tssr121748	transcription start site region 121748	1406 bp upstream