rs242999828 SNP Detail

Summary

• ID
  rs242999828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10584800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGGGCG TAACGGTGCC
  CTCTCCCGTA GAGTACTGTG AAGATAAAAT GATTGATTTT CACAGAGTAA GCACATCCTG
  TTAGCTTAAC AGTTTCATTA CTATTAGAAC AATTGTAATT CAACTGTATC CAAAACAAAA
  AAACCCCAAA AAACCATGAA TGTTTTTGAG GACTGTTAGT AAAGATCTAT TGTAGCTTTG
  M
  TTGTTATTAC TACAGATTAC TTTCTCTCCA CATACATAGG TGAAGGAGAA ACATTTCATT
  CTCTTCTCAA ATCTTGAATA GAATGAGGTG AATTATAGAG GACTTTGCTT GTAGAGCAGA
  GAGAAAGAGA GCTGAAATTG CAAGGCCTAG ATGCTTACCA GCCTCAGTCC TGGCCTTTTG
  TACATCCCCT TAGGGTCTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401732853	MGP_WTSI_19_10681926	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242999828					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401732853	MGP_WTSI_19_10681926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10584800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	1383 bp distal
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	within coordinates
Rr362968	regulatory region 362968	199 bp distal
Rr405857	regulatory region 405857	1780 bp downstream
Tkfc	triokinase, FMN cyclase	1782 bp upstream
Tssr155068	transcription start site region 155068	1882 bp downstream
Tssr155069	transcription start site region 155069	1822 bp downstream
Tssr155070	transcription start site region 155070	1792 bp downstream
Tssr155071	transcription start site region 155071	1741 bp downstream
Tssr155072	transcription start site region 155072	1488 bp downstream
Tssr155073	transcription start site region 155073	1148 bp downstream
Tssr155074	transcription start site region 155074	356 bp upstream
Tssr155075	transcription start site region 155075	811 bp upstream
Tssr158205	transcription start site region 158205	1970 bp upstream
Tssr158206	transcription start site region 158206	1966 bp upstream
Tssr158207	transcription start site region 158207	1521 bp upstream