rs243002170 SNP Detail

Summary

• ID
  rs243002170
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6726831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCTGCT GTTCAGCATC
  GACTCCGGAG CACAGGGCAG TGACTGGCCG CCTGTCACCC AGGGCATGGG CATCTCAGAA
  CCCAGGCTTG GGAGGCAGCT GCAAGTTAAG TGCAGGTCTC AATTGGCAAG GCTGCCATCA
  ACACATCACA AATCAGCAGC ATTATCAGCT CGGCACTGGT TATCCCTGAG AAAGAAAGGC
  W
  GAGCTGGATT TCTCACCCTC TTCCCCCATT CCCCGCCCTT TTTCAGAGGT TTTGGAAGAG
  AGGTGGTAAT AATAAAGTCA CATGGAAAGA AAATGAAACA CTTGGCAGTC CATCAGATGA
  CTAATGCAAG ATGCTGGTGA TGAATTTGCA GAGTGCGAGA GGCATCCATG TGTGCATCAA
  ATTAGTACGT TGTTGCTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320211601	CHEV_2_6643066	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243002170					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6726831 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	within coordinates
Tssr16031	transcription start site region 16031	839 bp downstream
Tssr22455	transcription start site region 22455	1180 bp upstream
Tssr22456	transcription start site region 22456	946 bp upstream
Tssr22457	transcription start site region 22457	391 bp upstream
Tssr22458	transcription start site region 22458	372 bp upstream
Tssr22459	transcription start site region 22459	336 bp upstream
Tssr22460	transcription start site region 22460	153 bp upstream
Tssr22461	transcription start site region 22461	117 bp upstream
Tssr22462	transcription start site region 22462	within coordinates
Tssr22463	transcription start site region 22463	150 bp downstream
Tssr22464	transcription start site region 22464	167 bp downstream
Tssr22465	transcription start site region 22465	217 bp downstream
Tssr22466	transcription start site region 22466	230 bp downstream