rs243019806 SNP Detail

Summary

• ID
  rs243019806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAATAA AATAAAATAA
  AATAAAATAA AATAAAATAG AGATGGTTCA GTAGTCAACA GCACTGGCTG CTCTTACAGA
  GGACAGGGGT TCAATTCCCA GCACCCACAT GGCAGCTCTC AACCTTCTGT TGCTCTAGTT
  CCAGGGGATC CAACACTCTC TTCTGGCCTT GGCAGCCACC AGGCAGGCAC GTGGTGCTCA
  R
  TCATACTTAC AAAGCACTCA TACATATAAA AGAAAATGAA ATCTTTAAAA CATGTAAGCG
  GAGGGCTGGG CTAAGGCTCT GTGGTAGGGA GCTTAACAAG CCTACTTAAA TTCAGTCCCC
  AATACCCTAC CTCAAATGTA TGAATGCTGA AACCTTAACT AAAGGCCCAG TGAGGTGGCC
  TGCTGGGTAA AGGCGCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370783850	MGP_WTSI_7_25182696	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243019806					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370783850	MGP_WTSI_7_25182696	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1509 bp proximal
Gm74022	predicted gene, 74022	1334 bp downstream
Rr643435	regulatory region 643435	294 bp distal
Rr643436	regulatory region 643436	551 bp proximal
Rr643437	regulatory region 643437	1452 bp proximal
Rr643438	regulatory region 643438	1953 bp proximal
Tssr64959	transcription start site region 64959	1929 bp upstream
Tssr64960	transcription start site region 64960	1997 bp upstream