rs243039557 SNP Detail

Summary

• ID
  rs243039557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86588905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTACTGC TCTATGGATG
  TAAACAATTC ATCCATGGGA TGTGGCGGCT CTGGTCTGTA ATCCCCAGCC AGCACTAGGG
  AAATTGCGGC AGGAGGATTG TTGTGAGTTC TAGGCCAGAA AAAATACCGT TCTCAAAGAG
  AGACAACTTA TCAAAAGCTT CTAATTAAAA GGTTGATCTG AATTTCCACA AGCAAAGCTT
  R
  AGCCTCTCTT CTGTGTTTTC TTTAGTAAAA CAATTCCAAA TTGCTCCTTA GTGATATCAG
  CCAACAACTA AGGAAGATGG CCAACTTTAT CGTGACTTAT GCAATATTTT TAAGTGGTCT
  GAATCATTTT TTAATCCTTG TCGAGAGGGC AGGGACGTGA ACTGGGTTAT TTGATCTTGA
  AAGTTGTACA GCCATCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362287731	MGP_WTSI_4_86316572	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243039557					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362287731	MGP_WTSI_4_86316572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86588905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	494 bp distal
Plin2	perilipin 2	608 bp upstream
Rr376780	regulatory region 376780	704 bp upstream
Rr594783	regulatory region 594783	1748 bp distal
Rr594784	regulatory region 594784	619 bp distal
Rr594785	regulatory region 594785	118 bp distal
Rr594786	regulatory region 594786	297 bp proximal
Rr594787	regulatory region 594787	1153 bp proximal
Rr594788	regulatory region 594788	1909 bp proximal
Tssr1221	transcription start site region 1221	415 bp downstream
Tssr37738	transcription start site region 37738	464 bp downstream
Tssr42336	transcription start site region 42336	1925 bp upstream
Tssr42337	transcription start site region 42337	1207 bp upstream
Tssr42338	transcription start site region 42338	1183 bp upstream
Tssr42339	transcription start site region 42339	1161 bp upstream
Tssr42340	transcription start site region 42340	643 bp upstream
Tssr42341	transcription start site region 42341	625 bp upstream
Tssr42342	transcription start site region 42342	1731 bp downstream
Tssr42343	transcription start site region 42343	1890 bp downstream