rs243043268 SNP Detail

Summary

• ID
  rs243043268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGGTGCT GGAGGGTGAG TACACAGTAG
  CTGGGTGCAC CTTTGGCTGG TCCTTGTGCC AGGTCTTATt gttgtgggac tttttcaggg
  ggacataaat aaatgcctgt cccagattag ctatcacaaa cagatataag aaatgattca
  R
  tccaggtcta gcttagtgaa ttcgtgagta tactggggct acttgtaggt gcctggcaag
  ggtttattta caggcaattc aaaaacaact gtgtcatcta aaaaaaaaaa atcatcccag
  catggattat gaataataaa aAAAACAGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408128	CHEV_17_48488268	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243043268					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trem2	triggering receptor expressed on myeloid cells 2			Intron
				Noncoding-Transcript-Variant
Tssr145097	transcription start site region 145097			1412 bp downstream
Tssr145098	transcription start site region 145098			1070 bp downstream
Tssr145099	transcription start site region 145099			444 bp downstream
Tssr145100	transcription start site region 145100			418 bp downstream
Tssr145101	transcription start site region 145101			377 bp downstream
Tssr145102	transcription start site region 145102			263 bp downstream
Tssr148525	transcription start site region 148525			207 bp upstream