rs243045004 SNP Detail

Summary

• ID
  rs243045004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25155141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATAAGCT AGTTGGAGGG
  AGTTCTCAGC TCCCTGGAAG GTCCGGGAGT CAGAGCTTGG CAGGCCTTTG CCTTCTGCAA
  GGATGGATTG AACGCCCAGG CTTCATGCCA GACGTGGTCA AGAGGGCCTT GGGCAGAGAA
  ACTCAAGAAT AATCCCCTAG AGGCTCAAAT GACCAAGGTG AGCCATATTT CCTAGCCAGC
  Y
  CTGGCCAGTG GCTTGGAACC CTCTGGGCAC AAGGAAATCA TTCCTCAGAT TCTTCCTGAT
  TGTTCCAGGG TCTGTGTTTG TCCCCAGGGG CAAATTCCAA GACCTATCCC ACATGACTCT
  TAGTCAGTTG GTACAGGGAA GTGCACCTTT CCCTTCTGCT GAGATGGCAC CTGCAGTGTC
  TACACTACAA CAGCTAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405745	MGP_WTSI_2_25120649	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243045004					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405745	MGP_WTSI_2_25120649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25155141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	1187 bp distal
Tprn	taperin	within coordinates
Tssr16682	transcription start site region 16682	1919 bp downstream
Tssr16683	transcription start site region 16683	1910 bp downstream
Tssr16684	transcription start site region 16684	1782 bp downstream
Tssr16685	transcription start site region 16685	1761 bp downstream
Tssr16686	transcription start site region 16686	1748 bp downstream
Tssr16687	transcription start site region 16687	1198 bp downstream
Tssr16688	transcription start site region 16688	839 bp downstream
Tssr16689	transcription start site region 16689	816 bp downstream
Tssr16690	transcription start site region 16690	428 bp upstream