rs243045736 SNP Detail

Summary

• ID
  rs243045736
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88870553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGACTAC TCAGACCCCT
  TTTACATCTT TGTTAGGTCT TAGGGTTGAG AAAGGGAGAG AGCCAAGTTC CATAGAGGGG
  ATTTCAAAAC AGGGTTGCTT GAGGGTCTGG GGACTCTAGC ACCCTGCTTC TTGCAGTGCT
  TTCTTGATTT GTAGAGGTTG TATTTTTTCA TTCACCTTCC AGATAGGATG TGGGTATTGT
  K
  CTCAGGGTTG ATTTAGGTCC ACTGGGCTGT AGTTCTCCAG TCGTCTGCTA AGACCAACTT
  CAGTGTTACA TTTAGTGCTG GGTGTTATTT TACTCCCCGT GTATTTCAGA CCAGTTTGAG
  GTGAGGGTGG GGATCAGAGC ACAAAAGTAA GACAGAAAGG GCTTGGAGCT TCAGGTCCTT
  GAGGTTACAC TGAAGAGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321602375	CHEV_5_89151719	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243045736					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88870553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16032	CpG island 16032	625 bp distal
Gm57324	predicted gene, 57324	1861 bp upstream
Mob1b	MOB kinase activator 1B	Intron
Rr614169	regulatory region 614169	1930 bp distal
Rr614170	regulatory region 614170	1813 bp distal
Rr614171	regulatory region 614171	34 bp distal
Rr614172	regulatory region 614172	1141 bp proximal
Rr614173	regulatory region 614173	1297 bp proximal
Tssr47022	transcription start site region 47022	1818 bp downstream
Tssr47023	transcription start site region 47023	1769 bp downstream
Tssr47024	transcription start site region 47024	1717 bp downstream
Tssr47025	transcription start site region 47025	1629 bp downstream
Tssr51697	transcription start site region 51697	1912 bp upstream