rs243047348 SNP Detail

Summary

• ID
  rs243047348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11336723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACTGCC GTCGAAAACG
  TTTTGTGAAC CAAAATGAAC TGGATTCTCC TGCTTCCTTC CTTCCTTCAC CGTGAGCATC
  CTTCAAGGGA AGCTTGAGGG CAATCTACAA GAGTAATCCC AGCACTCAGG AGGCAGAGGC
  AGGCGGATTT CTGAGTTCGA GGCCAGCCTG GTTTACAAAG TGAGTTCCAG GACAGCCAGG
  R
  CTATACAGAG AAACCCTGTC TCAAAAAAAA AAAAGAGAGA GAGAGTAATA GAAAGATGTC
  TAGCCAAAGG ATGGTACGAT GCAAGGACAA AATGTCACAA TAGAGCCCAT TATTACTGTG
  TACAATTAAT AAATACTAGT GAATGGGGTG TATTGTAGGA AATAAAGGGG AAAACCTGCT
  TGTCATAAAG TGATTCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353092490	MGP_WTSI_2_11253539	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243047348					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353092490	MGP_WTSI_2_11253539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11336723 () rs orientation: forward

Symbol	Name	Function Class
Gm37851	predicted gene, 37851	913 bp upstream
Gm38171	predicted gene, 38171	within coordinates
Gm75637	predicted gene, 75637	847 bp upstream
Rr396766	regulatory region 396766	134 bp downstream
Rr551766	regulatory region 551766	within coordinates
Rr551767	regulatory region 551767	217 bp distal
Rr551768	regulatory region 551768	716 bp proximal
Rr551769	regulatory region 551769	858 bp proximal
Tssr404	transcription start site region 404	681 bp downstream
Tssr405	transcription start site region 405	876 bp upstream
Tssr406	transcription start site region 406	899 bp upstream
Tssr22607	transcription start site region 22607	639 bp downstream
Tssr22608	transcription start site region 22608	659 bp downstream
Tssr22609	transcription start site region 22609	1463 bp downstream