rs243061874 SNP Detail

Summary

• ID
  rs243061874
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATTTGTT GTTTTCCTTT TTCACTTTTT
  CTTCTTCATT cccccccccc cccccccccc GGTAGTGCTG GGATCAGCCC TAGGACTTGA
  GCACACCAGA CAAGTGTTTC ACCCCTGCCT GAGCtatata tatataatat atatatatat
  M
  tatCCCTAGC CCCTTGTGTG TGGATCttgt ttggagatag gatcttactg tttatccatg
  gctggcttgg agctcacagt gtggaccaga ctggccttga actcagagat ccacccatgt
  ccacctcctg tgtgctggga ttaaagttga                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444407	CHEV_4_155369297	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243061874					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1351 bp distal
Rr100725	regulatory region 100725	644 bp distal
Rr377473	regulatory region 377473	815 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40750	transcription start site region 40750	1892 bp downstream
Tssr40751	transcription start site region 40751	1872 bp downstream
Tssr40752	transcription start site region 40752	1733 bp downstream
Tssr40753	transcription start site region 40753	1151 bp upstream