rs243065096 SNP Detail

Summary

• ID
  rs243065096
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87053788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCACGCCTC TCCCTCGGGC ACATATGTTC
  ACACAGTGAA CCGCAATTGG TATGGGGATG CTGACATGCC TGCCTCTGCG CTGCGGGAAG
  GTTGCAAGGA CATTGCTACA CAACTCATCT CCAACATGGA CATTAATGTA AGGAATAAAG
  K
  GTAagggaga ggggaaaggg gagggagagg aggagaagga gggggaggga gggggaggaa
  ggggggaaag gggGGAAGGG GTGGTCCCAG GCAACCTTGT AGACTGAACT CCCTGGATCT
  TCTGGGGTCT TTGAGGGCCG GGTAGTTCAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829034	CHEV_1_89022641	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243065096					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87053788 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	1044 bp proximal
Rr17963	regulatory region 17963	813 bp proximal
Tssr145	transcription start site region 145	278 bp upstream
Tssr146	transcription start site region 146	1522 bp upstream
Tssr147	transcription start site region 147	1874 bp downstream
Tssr7781	transcription start site region 7781	1106 bp downstream
Tssr7782	transcription start site region 7782	663 bp downstream
Tssr7783	transcription start site region 7783	370 bp downstream
Tssr7784	transcription start site region 7784	128 bp downstream
Tssr7785	transcription start site region 7785	89 bp downstream
Tssr7786	transcription start site region 7786	62 bp downstream
Tssr7787	transcription start site region 7787	257 bp upstream
Tssr7788	transcription start site region 7788	659 bp upstream
Tssr7789	transcription start site region 7789	689 bp upstream
Tssr7790	transcription start site region 7790	743 bp upstream
Tssr7791	transcription start site region 7791	867 bp upstream
Tssr7792	transcription start site region 7792	895 bp upstream
Tssr7793	transcription start site region 7793	908 bp upstream
Tssr7794	transcription start site region 7794	925 bp upstream
Tssr7795	transcription start site region 7795	951 bp upstream
Tssr7796	transcription start site region 7796	974 bp upstream
Tssr7797	transcription start site region 7797	991 bp upstream
Tssr7798	transcription start site region 7798	1028 bp upstream
Tssr7799	transcription start site region 7799	1264 bp upstream
Tssr7800	transcription start site region 7800	1283 bp upstream
Tssr7801	transcription start site region 7801	1342 bp upstream
Tssr7802	transcription start site region 7802	1469 bp upstream
Tssr7803	transcription start site region 7803	1530 bp upstream
Tssr7804	transcription start site region 7804	1554 bp upstream
Tssr7805	transcription start site region 7805	1628 bp upstream
Tssr7806	transcription start site region 7806	1642 bp upstream
Tssr7807	transcription start site region 7807	1662 bp upstream
Tssr7808	transcription start site region 7808	1767 bp upstream
Tssr7809	transcription start site region 7809	1837 bp upstream
Tssr7810	transcription start site region 7810	1862 bp upstream
Tssr7811	transcription start site region 7811	1891 bp upstream
Tssr7812	transcription start site region 7812	1941 bp upstream
Tssr7813	transcription start site region 7813	1982 bp upstream
Tssr12838	transcription start site region 12838	336 bp upstream
Tssr12839	transcription start site region 12839	326 bp upstream
Tssr12840	transcription start site region 12840	317 bp upstream
Tssr12841	transcription start site region 12841	732 bp downstream
Tssr12842	transcription start site region 12842	1058 bp downstream
Tssr12843	transcription start site region 12843	1320 bp downstream
Tssr12844	transcription start site region 12844	1511 bp downstream
Tssr12845	transcription start site region 12845	1682 bp downstream
Tssr12846	transcription start site region 12846	1743 bp downstream