rs243066708 SNP Detail

Summary

• ID
  rs243066708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43629480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACATTTA AATAAATTAC
  ATGAGTAGAG CCTTTCTTGA TATAAAACGC AAACATGCAA GATGAATACA ATATATCAAG
  GTGCAGTAGC CTTGCTTTGA TGGCAGTGGG GGATGAAACA TGACAGAGTC GCATGCTCTT
  ATCTTTAAAT TGCTGCTGCA CAGCTTAGGA ACTTCTACAA TACCCATAAG TCCCTCTTCT
  Y
  GCCTTGACGT TTCAGACTCT GTGTGATACC TGTTTGCTCT CTGCTTTAAG ACACATAAAC
  ACTTCAGTTA TAACTCAGAT GCCTAAGCAA ACTCAACGTT GCCTCTACTT CTCTTTTTCT
  TTCTCTGAAT CTCAGCCCTC GGGTTAAACG CCTAAGTAGT TCCAGGTCCT GTATCACACG
  TTGTCTTATC AGAAATGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269133	CHEV_2_43594988	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243066708					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43629480 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	1229 bp downstream
Rr556296	regulatory region 556296	1247 bp distal
Rr556297	regulatory region 556297	within coordinates
Tssr17595	transcription start site region 17595	56 bp upstream
Tssr23873	transcription start site region 23873	788 bp upstream
Tssr23874	transcription start site region 23874	439 bp upstream