rs243072936 SNP Detail

Summary

• ID
  rs243072936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCTCA CGGTCTCAGA
  GATGCAACTG CAGGGACCAC TGGCCAAAAG AGCAGTGGGA ACTGTGGCCA TGGGGCTGTC
  ATTGACTGCT TTTTCTTTTT GTTTGTCTTG AGACCTTGTT TCCGGTAGTC CAGACTTGCT
  TCAAATCTAA AAATGTAGCC AAGAATGAAC TTGAACTTTG GTATTCCCGT CTTATTCCCT
  R
  AGAGCTGGGA TCACAGGTGT GCCCACCATA CCCAGTCTGG GAATAGAACC CAAGGCTTTG
  TGCATCCTAG ACATCCACTC TTCCAATGAC TCCTGCTTCC CTCTCTTTCT TTTTGAAACA
  GGAGCTCACT AAGTAGCCCA GGCTGGCCTG GAACTTGTAA TTCTCCGGTC TCAGACTCCC
  AAATTGGGAG GGGGCTATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323109000	CHEV_9_96339557	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243072936					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321191 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	1912 bp distal
Cpgi22164	CpG island 22164	919 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	297 bp downstream
Rr368835	regulatory region 368835	815 bp downstream
Rr684963	regulatory region 684963	1448 bp distal
Rr684964	regulatory region 684964	98 bp distal
Rr684965	regulatory region 684965	1300 bp distal
Tssr90963	transcription start site region 90963	912 bp upstream