rs243077591 SNP Detail

Summary

• ID
  rs243077591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTCTAT ATTAAGTATA
  GACTTACTAT ATTATTAAGT AGAATAATAG TATGACTTGC TTCCTAAGGT TTGTGAAAAT
  TGAATTTTTA AAAGCAAAAT AACGTTTAGT ACTAGCCCTA CAGCCAAAGC TGACCAAGTA
  TTTACTCTTA ATTTTTCTCA ATTGTTTATT TCAATTTATT TCAGAATGTT CATGAAGATA
  Y
  GCACACTGAA TTTTAGAGAA AGTTAAGGAA TTTTCAGTAT TAAAAAAAAC AACATTATTT
  CATGTATAGA CTTTTAAATT AAATTCCAGT GTGATTCTTT GATGGAGACC AGCTAGTTGG
  GAGGCTAAGG CAGGAGAATT CCTGGGATCA GATGTTCAAG ACCAATATGA GCAATTCAGC
  AAGATCCCCA TCTCAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895795	CHEV_3_116296533	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243077591					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387264 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13737	CpG island 13737			861 bp proximal
Rr397965	regulatory region 397965			1148 bp upstream
Rr583746	regulatory region 583746			835 bp proximal
Rr583747	regulatory region 583747			1132 bp proximal
Rr583748	regulatory region 583748			1213 bp proximal
Rr583749	regulatory region 583749			1406 bp proximal
Rr583750	regulatory region 583750			1574 bp proximal
Sass6	SAS-6 centriolar assembly protein			1367 bp upstream
Trmt13	tRNA methyltransferase 13			Intron
				Noncoding-Transcript-Variant
Tssr31360	transcription start site region 31360			1344 bp upstream
Tssr35316	transcription start site region 35316			1201 bp downstream
Tssr35317	transcription start site region 35317			1233 bp downstream