rs243082399 SNP Detail

Summary

• ID
  rs243082399
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85698607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAGCGG GATATGAAGT
  TCTTGCTTCA TTTTGCCGGC CAGTGCGCTC TGGCCTTGTA GACCTGGTAA CTTCACTGGT
  CAGGGCAGCC GCCTGTGCAA CCCCAAGTCC CTCTCTCTTT TCCCTGGTTC TCTCCAGTCG
  GTCCCGGTAG CTGATTTCCA GCCTCCTCAT CTCCTAGCTT GTTCACGTTC CAACACTTGC
  W
  GACTTCGGGC TAGGGGTGAC TAACTTCTCC CGGCCATCAG CTGAGCAGCC AGGCAGCCAC
  CGGTGCTTCC TGGCGCGTCT CTGGGCATGC AGCACTGCGG TGACCCCAAC AGGGCCGGCT
  GCGGCCTGGG AAGTCCTTGG CTTTGTGTAT AAATGGCGGT ACTCCCAGCT TTTTTTCCAG
  GGCATAGTTG GTCAGTGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397172085	MGP_WTSI_16_85901964	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243082399					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397172085	MGP_WTSI_16_85901964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85698607 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	594 bp upstream
Cpgi8391	CpG island 8391	1247 bp distal
Cpgi8392	CpG island 8392	409 bp distal
Gm46558	predicted gene, 46558	within coordinates
Rr325517	regulatory region 325517	within coordinates
Tssr141914	transcription start site region 141914	1467 bp upstream
Tssr141915	transcription start site region 141915	1439 bp upstream
Tssr141916	transcription start site region 141916	1410 bp upstream
Tssr141917	transcription start site region 141917	1086 bp upstream
Tssr141918	transcription start site region 141918	1028 bp upstream
Tssr141919	transcription start site region 141919	974 bp upstream
Tssr141920	transcription start site region 141920	648 bp upstream
Tssr141921	transcription start site region 141921	586 bp upstream
Tssr141922	transcription start site region 141922	357 bp upstream
Tssr141923	transcription start site region 141923	73 bp downstream