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rs243087511 SNP Detail
Summary
  • ID
    rs243087511
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:126830501 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCCAAGAAC ACCAGAGATC
    TGGTGAAGCA TTTACACCAA CCAAGGGGGA GCATTTATCA AGCCATCAGT GGGCCAGGTG
    GGTCTGTTGC AGGTAGAACT GGTGGGTAGG GTCCCAGAGT GGCTTTAACC CCCAAAAGGG
    GAAAGCAGGC ACCAGGATAT TCATGTTAGG GCGGGTTTGT ATCGAAAGTT GACCTTGGTG
    S
    CTGGGGCCAA GGAATTTGCA GAGAACACAC CACACAATTG ACCTATAATA ATGCAATAAA
    TGTTAAGAGA TTTATTGGGG GGGCACAAAA GGCTGATTCA GAGCAGGAGA GAGAGAGAGA
    GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAACGA ACCATTGATG GCATGGGCTT
    TATAAAGGGT ATGGCAGCTG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373083596 MGP_WTSI_7_134374843 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243087511 SNP G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss373083596 MGP_WTSI_7_134374843 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:126830501 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi19733 CpG island 19733 1406 bp proximal
Gm4532 predicted gene 4532 1089 bp downstream
Rr153715 regulatory region 153715 1901 bp distal
Rr166726 regulatory region 166726 within coordinates
Rr381454 regulatory region 381454 529 bp upstream
Septin1 septin 1 within coordinates
Tssr69182 transcription start site region 69182 1555 bp upstream
Tssr69183 transcription start site region 69183 1715 bp upstream
Tssr69184 transcription start site region 69184 1898 bp upstream
Tssr74974 transcription start site region 74974 1302 bp downstream
Tssr74975 transcription start site region 74975 1419 bp downstream
Tssr74976 transcription start site region 74976 1561 bp downstream
Tssr74977 transcription start site region 74977 1795 bp downstream
Zfp553 zinc finger protein 553 1732 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory