rs243095472 SNP Detail

Summary

• ID
  rs243095472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187994113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGTCCTG AGGTGAACAA
  AGCCAAAGAG AAAATTCCAT CAATTGGCCA GCCTCATGCT GGCTCCTTCC TCCCAAAGAG
  GGAACATGCA GAACTGCAGA ACGACCCATA TAGTTGCTGT CTTATAGAAT CAGGCCTTTG
  TGATTAAAGC ATCGCATGGA GTAAGATTCA TAAAAGCAGG GAAAGGGAGG GGCCTGGCAG
  R
  GTATTACAGG ATAAGGTGTA CTGCTACTTT AAAAATTAAG CATGCATGCC CCACCTGACT
  CCCTCCCACT GTACCAGCTT GAAAGCCTTG AAAGCCAGGA CACCTCAGTT GCTGAGGGGC
  CACCGAACAG CCTACACTGA GCTACAGGTA ACCCTTTTGA GCTCTGGGGA AGAGTGGCCT
  GAGTGACAAG TCTCACTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320187307	CHEV_1_190085795	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243095472					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187994113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	1301 bp proximal
Rr425684	regulatory region 425684	967 bp distal
Rr425685	regulatory region 425685	1205 bp distal
Tssr368	transcription start site region 368	983 bp upstream
Tssr10680	transcription start site region 10680	65 bp upstream
Tssr10681	transcription start site region 10681	101 bp upstream
Ush2a	usherin	922 bp upstream